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FileName Description Download
Disease-Metabolite-Info All details of relationships between diseases and metabolite. Download
Disease-Microbe-Info All details of relationships between diseases and microbe. Download
Microbe-Metabolite-Info All details of relationships between microbe and metabolite. Download
Metabolite-Gene-Network-Info All details of Network relationships between metabolic and gene. Download

  References

  1. Wang CY, Kuang X, Wang QQ, et al. GMMAD: a comprehensive database of human gut microbial metabolite associations with diseases. BMC Genomics. 2023;24(1):482. doi:10.1186/s12864-023-09599-5
  2. Dai D, Zhu J, Sun C, et al. GMrepo v2: a curated human gut microbiome database with special focus on disease markers and cross-dataset comparison. Nucleic Acids Res. 2022;50(D1):D777-D784. doi:10.1093/nar/gkab1019
  3. Han S, Van Treuren W, Fischer CR, et al. A metabolomics pipeline for the mechanistic interrogation of the gut microbiome. Nature. 2021;595(7867):415-420. doi:10.1038/s41586-021-03707-9
  4. Noronha A, Modamio J, Jarosz Y, et al. The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease. Nucleic Acids Res. 2019;47(D1):D614-D624. doi:10.1093/nar/gky992
  5. Kosina SM, Greiner AM, Lau RK, et al. Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. BMC Microbiol. 2018;18(1):115. doi:10.1186/s12866-018-1256-y
  6. Cheng L, Qi C, Yang H, et al. gutMGene: a comprehensive database for target genes of gut microbes and microbial metabolites. Nucleic Acids Res. 2022;50(D1):D795-D800. doi:10.1093/nar/gkab786
  7. Szklarczyk, Damian et al. “STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.” Nucleic acids research vol. 44,D1 (2016): D380-4. doi:10.1093/nar/gkv1277
  8. Yu G, Xu C, Zhang D, Ju F, Ni Y. MetOrigin: Discriminating the origins of microbial metabolites for integrative analysis of the gut microbiome and metabolome. imeta. 2022;1(1):e10. doi:10.1002/imt2.10